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Programs
The Ratio Calculator is an ImageJ plugin. Click here to go to the Bitbucket project page.Additional documentation for the Ratio Calculator will be published here soon.
The Mitotracker is a Matlab application. It is still being optimized prior to release.
I have also created a PHP/SQL-based fly stock collection database. It is not good enough for public release yet, but if you are interested in it, just contact me.
Unrelated: scripts for downloading images from livejournal.com can be found here.